Package: diffee 1.1.0
diffee: Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
This is an R implementation of Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure (DIFFEE). The DIFFEE algorithm can be used to fast estimate the differential network between two related datasets. For instance, it can identify differential gene network from datasets of case and control. By performing data-driven network inference from two high-dimensional data sets, this tool can help users effectively translate two aggregated data blocks into knowledge of the changes among entities between two Gaussian Graphical Model. Please run demo(diffeeDemo) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Arshdeep Sekhon, Yanjun Qi (2018) <arxiv:1710.11223>.
Authors:
diffee_1.1.0.tar.gz
diffee_1.1.0.zip(r-4.5)diffee_1.1.0.zip(r-4.4)diffee_1.1.0.zip(r-4.3)
diffee_1.1.0.tgz(r-4.4-any)diffee_1.1.0.tgz(r-4.3-any)
diffee_1.1.0.tar.gz(r-4.5-noble)diffee_1.1.0.tar.gz(r-4.4-noble)
diffee_1.1.0.tgz(r-4.4-emscripten)diffee_1.1.0.tgz(r-4.3-emscripten)
diffee.pdf |diffee.html✨
diffee/json (API)
# Install 'diffee' in R: |
install.packages('diffee', repos = c('https://blw921.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/qdata/diffee/issues
- cancer - Microarray data set for breast cancer
- exampleData - A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
- exampleData500 - A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
- exampleDataGraph - A simulated toy dataset that includes 3 igraph objects
- nip_37_data - NIPS word count dataset
Last updated 6 years agofrom:1d0efa7e93. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-win | OK | Nov 02 2024 |
R-4.5-linux | OK | Nov 02 2024 |
R-4.4-win | OK | Nov 02 2024 |
R-4.4-mac | OK | Nov 02 2024 |
R-4.3-win | OK | Nov 02 2024 |
R-4.3-mac | OK | Nov 02 2024 |
Exports:diffeeplot.diffeereturngraph
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixmvtnormpcaPPpkgconfigrlangvctrs