Package: jeek 1.1.1

jeek: A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models

Provides a fast and scalable joint estimator for integrating additional knowledge in learning multiple related sparse Gaussian Graphical Models (JEEK). The JEEK algorithm can be used to fast estimate multiple related precision matrices in a large-scale. For instance, it can identify multiple gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogeneous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(jeek) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Arshdeep Sekhon, Yanjun Qi "A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models" (ICML 2018) <arxiv:1806.00548>.

Authors:Beilun Wang [aut, cre], Yanjun Qi [aut], Zhaoyang Wang [aut]

jeek_1.1.1.tar.gz
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jeek.pdf |jeek.html
jeek/json (API)

# Install 'jeek' in R:
install.packages('jeek', repos = c('https://blw921.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/qdata/jeek/issues

Datasets:
  • cancer - Microarray data set for breast cancer
  • exampleData - A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
  • exampleDataGraph - A simulated toy dataset that includes 3 igraph objects
  • nip_37_data - NIPS word count dataset

On CRAN:

1.20 score 16 scripts 127 downloads 3 exports 14 dependencies

Last updated 6 years agofrom:068f49e03b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-winOKNov 05 2024
R-4.5-linuxOKNov 05 2024
R-4.4-winOKNov 05 2024
R-4.4-macOKNov 05 2024
R-4.3-winOKNov 05 2024
R-4.3-macOKNov 05 2024

Exports:jeekplot.jeekreturngraph

Dependencies:clicpp11glueigraphlatticelifecyclelpSolvemagrittrMatrixmvtnormpcaPPpkgconfigrlangvctrs