Package: jeek 1.1.1

jeek: A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models

Provides a fast and scalable joint estimator for integrating additional knowledge in learning multiple related sparse Gaussian Graphical Models (JEEK). The JEEK algorithm can be used to fast estimate multiple related precision matrices in a large-scale. For instance, it can identify multiple gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogeneous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(jeek) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Arshdeep Sekhon, Yanjun Qi "A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models" (ICML 2018) <arxiv:1806.00548>.

Authors:Beilun Wang [aut, cre], Yanjun Qi [aut], Zhaoyang Wang [aut]

jeek_1.1.1.tar.gz
jeek_1.1.1.zip(r-4.7)jeek_1.1.1.zip(r-4.6)jeek_1.1.1.zip(r-4.5)
jeek_1.1.1.tgz(r-4.6-any)jeek_1.1.1.tgz(r-4.5-any)
jeek_1.1.1.tar.gz(r-4.7-any)jeek_1.1.1.tar.gz(r-4.6-any)
jeek_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
jeek/json (API)

# Install 'jeek' in R:
install.packages('jeek', repos = c('https://blw921.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/qdata/jeek/issues

Datasets:
  • cancer - Microarray data set for breast cancer
  • exampleData - A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
  • exampleDataGraph - A simulated toy dataset that includes 3 igraph objects
  • nip_37_data - NIPS word count dataset

On CRAN:

Conda:

1.00 score 33 downloads 3 exports 14 dependencies

Last updated from:068f49e03b. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK96
source / vignettesOK169
linux-release-x86_64OK116
macos-release-arm64OK140
macos-oldrel-arm64OK157
windows-develOK75
windows-releaseOK71
windows-oldrelOK80
wasm-releaseOK103

Exports:jeekplot.jeekreturngraph

Dependencies:clicpp11glueigraphlatticelifecyclelpSolvemagrittrMatrixmvtnormpcaPPpkgconfigrlangvctrs